dont worry iskhan,its learning process,you may find some difficulties though but fruite will be better.
i think your plants died due to over watering.jamuns like well drain soils.
making bonsai from the seed or germination is very slow process,please plant them in big ordinary gardening pots or in grounds,when they got good stems/trunks then convert them in bonsai training pot.please not training pots are not the simple bonsai pots,they are usually big in size incomparable to regular bonsai pots.please see the few sample training pots.
http://knowledgeofbonsai.org/pots-slabs-pottery/grow-boxes-and-training-pots/ (source knowledge of bonsai )
after training them 2 or more years in the training pot,plant them in the regular bonsai pot of your choice.
its lengthy but proper way to make and train a Bonsai.